Proteins consisting of identical subunits arranged symmetrically around a central axis (cyclic homo-oligomers) play key roles in many biological processes. Researchers have now developed a systematic approach to their design and demonstrated its accuracy using protein crystallography and small-angle x-ray scattering. ... Read more »
A Hollow Pyramid Unlocks Principles of Protein Architecture
Researchers have designed a hollow, pyramid-shaped protein with a controllable cavity size that could be useful in the capture and release of smaller compounds. The tools and techniques developed could be useful in analyzing and optimizing designed protein assemblies and understanding their behavior in solution. ... Read more »
Sequencing of Green Alga Genome Provides Blueprint to Advance Clean Energy, Bioproducts
Scientists have sequenced the genome of a green alga that has drawn commercial interest as a strong producer of quality lipids for biofuel production. The chromosome-assembly genome of Chromochloris zofingiensis provides a blueprint for new discoveries in sustainable biofuels, antioxidants, and other valuable bioproducts. ... Read more »
Bending the (β-Sheet) Curve to Shape Protein Cavities
Curved β sheets are basic building blocks of many protein cavities that, by serving as binding sites for other molecules, are essential to protein function. β-sheet curvature can now be controlled with atomic-level accuracy, opening the door to custom-designed sites capable of entirely new functions.
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Researchers Gain Insight into Protein Critical to Zika Virus Reproduction
Zika virus is a mosquito-borne infectious disease linked to certain birth defects in infants. Scientists have mapped a key viral protein called NS5, which contains two enzymes: one reduces the body’s ability to mount an immune response against infection and the other helps start the genetic replication process. ... Read more »
Could This Enzyme Help Turn Biofuel Waste into Something Useful?
A protein used by common soil bacteria is providing new clues in the effort to convert aryl compounds, a common waste product from industrial and agricultural practices, into something of value. This Joint BioEnergy Institute (JBEI) study, which involved ALS Beamline 8.2.2, targets LigM for its role in breaking down aromatic pollutants. ... Read more »
NCAA Drives Formation of Designed Proteins
A noncanonical amino-acid (NCAA) complex has been found to drive the self-assembly of a computationally designed protein. Bpy-ala, which is “noncanonical” because it’s not among the 20 amino acids that occur naturally, has useful properties that could be used to generate novel photoactive proteins. ... Read more »
Ptychography of a Bacterium’s Inner Compass
Magnetotactic bacteria (MTB) synthesize chains of magnetic nanocrystals (magnetosomes) that interact with the Earth’s magnetic field like an inner compass needle, simplifying their search for optimum environments. Ptychographic spectra of magnetosomes from a marine MTB provides insight into how these inner compasses form. ... Read more »
Mapping the Migration of Genetic Material
A powerful soft x-ray microscope captures tomographic images of the genetic material in the nuclei of nerve cells at different stages of maturity. The detailed 3D visualizations show an unexpected connectivity in the genetic material and provide a new understanding of a cell’s evolving architecture. ... Read more »
Self-Assembly of a Programmable DNA Lattice
The use of DNA for nanotechnology has gained interest because it is a highly “programmable” polymer with “sticky ends,” allowing the self-assembly of molecular scaffolds for other proteins and molecules. Their high-resolution structures will help map new routes toward the rational design of self-assembling 3D DNA crystals. ... Read more »
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